Issues with xinput packaged with game

I assumed x360ce would work with the xinput dll included with the game but it seems not to, the small indicator on the controller tab remains red and no keypresses are detected. However if I delete the xinput dll and allow x360ce to create one it works correctly. The problem lies in the fact that with games that do integrity checks the replaced file is flagged and replaced then breaking x360ce.

The version of xinput seems to be the same (1.3) and I've correctly installed it in the proper...

Issues with xinput packaged with game